Feb. 6, 2014, 3:48 a.m. by Rosalind Team
Find the highest-scoring local alignment between two strings.
Given: Two amino acid strings.
Return: The maximum score of a local alignment of the strings, followed by a local alignment of these strings achieving the maximum score. Use the PAM250 scoring matrix and indel penalty σ = 5. (If multiple local alignments achieving the maximum score exist, you may return any one.)
15 EANL-Y ENALTY