Implement the Viterbi Algorithm solved by 148

Sept. 16, 2015, 3 a.m. by Rosalind Team

Topics: HMM

Decoding Problem

Given: A string x, followed by the alphabet Σ from which x was constructed, followed by the states States, transition matrix Transition, and emission matrix Emission of an HMM (Σ, States, Transition, Emission).

Return: A path that maximizes the (unconditional) probability Pr(x, π) over all possible paths π.

Sample Dataset

xyxzzxyxyy
--------
x   y   z
--------
A   B
--------
    A   B
A   0.641   0.359
B   0.729   0.271
--------
    x   y   z
A   0.117   0.691   0.192   
B   0.097   0.42    0.483

Sample Output

AAABBAAAAA

Extra Dataset

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